File format preference not respect the local `config.edn` file setup

Every time the software opened, it will set the preferred format as markdown mode instead of Org-mode

For example, if I close the software and reopen it to a repository, I will not be able to use Org-mode format. After manual setup of the preference again, it will set the format as org-mode. I think this is an issue with the preference order.

I am testing with a Windows environment (alpha testing).

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