Fixed with a nice running from menu, by either:
installing the Native ARM64 Version of Logseq with command
flatpak install flathub com.logseq.Logseq
or
by installing missing dependencies
sudo apt update && sudo apt install -y libasound2 libatk1.0-0 libnss3 libxss1 libgconf-2-4 libgtk-3-0 libgbm1