Scientific Workflows with Zotero

You are right about Zotero storage. I think it is also possible to directly sync the storage folder with syncthing or similar, just the database itself has to be sync’ed through the Zotero server.

I had a look at how the Zotero annotations are stored in the database: The annotations are stored individually in the sqlite file. Images are stored as regular Items in the storage folder. So most likely most users will be able to stay under the free tier if they sync the storage folder manually.

For me it is still not an option to upload all my database to the Zotero cloud due to privacy concerns, but it might be ok for some.

Personally, I’d like to move away from Zotero for anything beyond collecting and managing items. The architecture of Zotero is too closed for my taste. Moving items around is surprisingly difficult if not impossible, for example, moving items between libraries resets the created date, which would mess up my workflow. Also, Zotero’s tagging and filtering is lacking compared to Logseq, no hierarchies etc.