As per Logseq docs on GitHub:
On desktop, the graph cache directory ~/.logseq/graphs/ has moved to ~/logseq/graphs. See DB Graph Directories for how they are used for DB graphs.
I’d like to request that the graph cache directory be made configurable. As a Linux user, having applications create non-hidden folders directly in ~/ makes the file system feel messy. Following the XDG Base Directory Specification (e.g., using ~/.cache or ~/.local/share ) or allowing us to define a custom path would solve this.